Mid–1997 the CIJ logo was the only one used on Fender guitars coming out of Japan (with exception the Squire series). I really don’t know, but the MIJ logo Fenders were for the USA market.
USA Fender wanted to stop the import of these guitars to the USA due to firing up their Mexican plant and due to the “too good” quality Japan was creating which competed with the USA models.
Most of the “Made in Japan” and the “Crafted in Japan” guitars us a 6 digit number (But not all and excluding the A prefix! A 6 DIGITS 1985-1987, 1997-1998 (Made in Japan) and (Crafted in Japan) This was one of the most confusing serial uber used by Japan.
They placed the "A" on the bridge on the Telecasters and some of them could be as late as 1996 (as in the case with many JD Teles.
The new Fender did not acquire any physical assets of the old company, just the name "Fender".
Hence during 1985 to 1987, production of Fender guitars was only done in Japan, while USA Fender created a new factory in California. BUT note that the "E" and "N" series does sometimes appear on "made in Japan" models. In any case, if it says "made in Japan", then it is... Fender has recently (in the last 20 years) introduced LOTS of different serial numbers schemes, depending on the country the Fender was made (USA, Mexico, Japan, Korea, etc). Sorry, since I do not collect new Fenders, I don't really keep track of these things.
The early series are the most popular for collectors.
Yet if you take the neck off they can be 1994-1997!
The Japanese-made Fenders do have some slight serial number differences (typically a "J" serial number prefix). I believe this was a mistake on Fender's part using the same prefix for both U. Below are some examples of letter prefixes used in recent serial number schemes.
Japanese Serial Numbers on Peghead Decal Note the lack of S, E, N series.
2,968,204 for the single coil pickup patent awarded in 1961 under other for Jaguar, Stratocaster, Duosonic.
3,143,028 the patent granted in August 1964 for Fender's adjustable neck construction. (Used since 1957 to the Precision Bass) The DES is the serial number. The serial number for these three models can be found at the bridge plate and is used until about early 1954. Until 1955, the serial number is applied to the bridge plate.
Most specifications for the Fender guitars are hardly changed.